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Metabolomic profiling implicates mitochondrial and immune dysfunction in disease syndromes of the critically endangered black rhinoceros (Diceros bicornis)DOI: info:10.1038/s41598-023-41508-4v. 13No. 1
Corder, Molly L., Petricoin, Emanuel F., Li, Yue, Cleland, Timothy P., DeCandia, Alexandra L., Aguirre, A. A., and Pukazhenthi, Budhan S. 2023. "Metabolomic profiling implicates mitochondrial and immune dysfunction in disease syndromes of the critically endangered black rhinoceros (Diceros bicornis)." Scientific Reports, 13, (1). https://doi.org/10.1038/s41598-023-41508-4.
Gas-phase dopant flow to modify nanoLC-MS and nanoESI protein chargeDOI: info:10.1016/j.ijms.2023.117026v. 487
Newsome, G. Asher and Cleland, Timothy P. 2023. "Gas-phase dopant flow to modify nanoLC-MS and nanoESI protein charge." International Journal of Mass Spectrometry, 487. https://doi.org/10.1016/j.ijms.2023.117026.
Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomesDOI: info:10.46471/gigabyte.64v. 20221–14
Kawahara, Akito Y., Storer, Caroline G., Markee, Amanda, Heckenhauer, Jacqueline, Powell, Ashlyn, Plotkin, David, Hotaling, Scott, Cleland, Timothy P., Dikow, Rebecca B., Dikow, Torsten, Kuranishi, Ryoichi B., Messcher, Rebeccah, Pauls, Steffen U., Stewart, Russell J., Tojo, Koji, and Frandsen, Paul B. 2022. "Long-read HiFi sequencing correctly assembles repetitive heavy fibroin silk genes in new moth and caddisfly genomes." Gigabyte, 2022 1–14. https://doi.org/10.46471/gigabyte.64.
Variation in Milk Proteins Across Lactation in DOI: info:10.1021/acs.jproteome.2c00373v. 21American Chemical Society2647–2654
Power, Michael L. and Cleland, Timothy P. 2022. "Variation in Milk Proteins Across Lactation in Pongo pygmaeus and Gorilla gorilla." Journal of Proteome Research, 21 2647–2654. https://doi.org/10.1021/acs.jproteome.2c00373.
In-Line Dopant Generation for Atmospheric Pressure Ionization Mass SpectrometryDOI: info:10.1021/acs.analchem.1c02400v. 93No. 40American Chemical Society13527–13533
Newsome, G. Asher and Cleland, Timothy P. 2021. "In-Line Dopant Generation for Atmospheric Pressure Ionization Mass Spectrometry." Analytical Chemistry, 93, (40) 13527–13533. https://doi.org/10.1021/acs.analchem.1c02400.
Proteomic profile of bone "collagen" extracted for stable isotopes: implications for bulk and single amino acid analysesDOI: info:10.1002/rcm.9025v. 35No. 6WileyArticle e9025
Cleland, Timothy P., Sarancha, Julianne J., and France, Christine A. M. 2021. "Proteomic profile of bone "collagen" extracted for stable isotopes: implications for bulk and single amino acid analyses." Rapid Communications in Mass Spectrometry, 35, (6) Article e9025. https://doi.org/10.1002/rcm.9025.
Diagenetiforms: A new term to explain protein changes as a result of diagenesis in paleoproteomicsDOI: info:10.1016/j.jprot.2020.103992v. 230ElsevierArticle 103992
Cleland, Timothy P., Schroeter, Elena R., and Colleary, Caitlin. 2021. "Diagenetiforms: A new term to explain protein changes as a result of diagenesis in paleoproteomics." Journal of Proteomics, 230 Article 103992. https://doi.org/10.1016/j.jprot.2020.103992.
Deep Time Paleoproteomics: Looking ForwardDOI: info:10.1021/acs.jproteome.1c00755
Schroeter, Elena R., Schweitzer, Mary H., and Cleland, Timothy P. 2021. "Deep Time Paleoproteomics: Looking Forward." Journal of Proteome Research, https://doi.org/10.1021/acs.jproteome.1c00755.
Mechano-chemical regulation of bat wing bones for flightDOI: info:10.1016/j.jmbbm.2021.104809v. 124Elsevier
Cleland, Timothy P., Wang, Zehai, Wang, Bowen, Picu, Catalin R., and Vashishth, Deepak. 2021. "Mechano-chemical regulation of bat wing bones for flight." Journal of the Mechanical Behavior of Biomedical Materials, 124. https://doi.org/10.1016/j.jmbbm.2021.104809.
First annotated genome of a mandibulate moth, , generated using PacBio HiFi sequencingDOI: info:10.1093/gbe/evab229v. 13No. 10Oxford University Press
Li, Xuankun, Ellis, Emily, Plotkin, David, Imada, Yume, Yago, Masaya, Heckenhauer, Jacqueline, Cleland, Timothy P., Dikow, Rebecca B., Dikow, Torsten, Storer, Caroline G., Kawahara, Akito Y., and Frandsen, Paul B. 2021. "First annotated genome of a mandibulate moth, Neomicropteryx cornuta , generated using PacBio HiFi sequencing." Genome Biology and Evolution, 13, (10). https://doi.org/10.1093/gbe/evab229.
Creation of a peptide database of corneous beta-proteins of marine turtles for the identification of tortoiseshell: archaeological combs as case studyDOI: info:10.1098/rsos.201857v. 8No. 2The Royal SocietyArticle 201857
Soulat, Jean, Cleland, Timothy P., and Solazzo, Caroline. 2021. "Creation of a peptide database of corneous beta-proteins of marine turtles for the identification of tortoiseshell: archaeological combs as case study." Royal Society Open Science, 8, (2) Article 201857. https://doi.org/10.1098/rsos.201857.
Microwave‐assisted acid hydrolysis for whole-bone proteomics and paleoproteomicsDOI: info:10.1002/rcm.8568v. 34No. 2Article rcm.8568
Colleary, Caitlin, Little, Nicole C., and Cleland, Timothy P. 2020. "Microwave‐assisted acid hydrolysis for whole-bone proteomics and paleoproteomics." Rapid Communications in Mass Spectrometry, 34, (2) Article rcm.8568. https://doi.org/10.1002/rcm.8568.
Chemical effects of diceCT staining protocols on fluid-preserved avian specimensDOI: info:10.1371/journal.pone.0238783v. 15No. 9Public Library of ScienceArticle e0238783
Early, Catherine M., Morhardt, Ashley C., Cleland, Timothy P., Milensky, Christopher M., Kavich, Gwénaëlle M., and James, Helen F. 2020. "Chemical effects of diceCT staining protocols on fluid-preserved avian specimens." PLOS One, 15, (9) Article e0238783. https://doi.org/10.1371/journal.pone.0238783.
Novel proteomic profiling of epididymal extracellular vesicles in the domestic cat reveals proteins related to sequential sperm maturation with differences observed between normospermic and teratospermic individualsDOI: info:10.1074/mcp.RA120.002251v. 19No. 12American Society of Biochemistry and Molecular Biology, Incorporated2090–2103
Rowlison, Tricia, Cleland, Timothy P., Ottinger, Mary Ann, and Comizzoli, Pierre. 2020. "Novel proteomic profiling of epididymal extracellular vesicles in the domestic cat reveals proteins related to sequential sperm maturation with differences observed between normospermic and teratospermic individuals." Molecular & Cellular Proteomics, 19, (12) 2090–2103. https://doi.org/10.1074/mcp.RA120.002251.
Altered protein levels in bone marrow lesions of hip osteoarthritis: Analysis by proteomics and multiplex immunoassaysDOI: info:10.1111/1756-185X.13843v. 23No. 6788–799
Shabestari, Maziar, Shabestari, Yashar R., Landin, Maria A., Pepaj, Milaim, Cleland, Timothy P., Reseland, Janne E., and Eriksen, Erik F. 2020. "Altered protein levels in bone marrow lesions of hip osteoarthritis: Analysis by proteomics and multiplex immunoassays." International Journal of Rheumatic Diseases, 23, (6) 788–799. https://doi.org/10.1111/1756-185X.13843.
Rapid Evaluation of the Debromination Mechanism of Eosin in Oil Paint by Direct Analysis in Real Time and Direct Infusion-Electrospray Ionization Mass SpectrometryDOI: info:10.1021/acs.analchem.9b02568v. 91No. 16American Chemical Society10856–10863
Alvarez-Martin, Alba, Cleland, Timothy P., Kavich, Gwénaëlle M., Janssens, Koen, and Newsome, G. Asher. 2019. "Rapid Evaluation of the Debromination Mechanism of Eosin in Oil Paint by Direct Analysis in Real Time and Direct Infusion-Electrospray Ionization Mass Spectrometry." Analytical Chemistry, 91, (16) 10856–10863. https://doi.org/10.1021/acs.analchem.9b02568.
Proteomic and direct analysis in real time mass spectrometry analysis of a Native American ceremonial hatDOI: info:10.1039/c9an01557dv. 144No. 24Royal Society of Chemistry7437–7446
Cleland, Timothy P., Newsome, G. Asher, and Hollinger, R. Eric. 2019. "Proteomic and direct analysis in real time mass spectrometry analysis of a Native American ceremonial hat." The Analyst, 144, (24) 7437–7446. https://doi.org/10.1039/c9an01557d.
Paleoproteomics of Mesozoic dinosaurs and other Mesozoic fossilsDOI: info:10.1002/pmic.201800251v. 19No. 16Wiley1800251
Schweitzer, Mary Higby, Schroeter, Elena R., Cleland, Timothy P., and Zheng, Wenxia. 2019. "Paleoproteomics of Mesozoic dinosaurs and other Mesozoic fossils." Proteomics, 19, (16) 1800251. https://doi.org/10.1002/pmic.201800251.
Solid Digestion of Demineralized Bone as a Method To Access Potentially Insoluble Proteins and Post-Translational ModificationsDOI: info:10.1021/acs.jproteome.7b00670v. 17No. 1American Chemical Society536–542
Cleland, Timothy P. 2018. "Solid Digestion of Demineralized Bone as a Method To Access Potentially Insoluble Proteins and Post-Translational Modifications." Journal of Proteome Research, 17, (1) 536–542. https://doi.org/10.1021/acs.jproteome.7b00670.
Human Bone Paleoproteomics Utilizing the Single-Pot, Solid-Phase-Enhanced Sample Preparation Method to Maximize Detected Proteins and Reduce HumicsDOI: info:10.1021/acs.jproteome.8b00637v. 17No. 11American Chemical Society3976–3983
Cleland, Timothy P. 2018. "Human Bone Paleoproteomics Utilizing the Single-Pot, Solid-Phase-Enhanced Sample Preparation Method to Maximize Detected Proteins and Reduce Humics." Journal of Proteome Research, 17, (11) 3976–3983. https://doi.org/10.1021/acs.jproteome.8b00637.
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