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Showing 1-18 of about 18 results.
Developing responsible AI practices at the Smithsonian InstitutionDOI: info:10.3897/rio.9.e113334v. 9
Dikow, Rebecca B., DiPietro, Corey, Trizna, Michael G., BredenbeckCorp, Hanna, Bursell, Madeline, Ekwealor, Jenna T. B., Hodel, Richard, Lopez, Nilda, Mattingly, William, Munro, Jeremy, Naples, Richard M., Oubre, Candace, Robarge, Drew, Snyder, Sara C., Spillane, Jennifer, Tomerlin, Melinda Jane, Villanueva, Luis, and White, Alexander. 2023. "Developing responsible AI practices at the Smithsonian Institution." Research Ideas and Outcomes, 9. https://doi.org/10.3897/rio.9.e113334.
Let the Records Show: Attribution of Scientific Credit in Natural History CollectionsDOI: info:10.1086/724949v. 184No. 5392–404
Dikow, Rebecca B., Ekwealor, Jenna T. B., Mattingly, William J. B., Trizna, Michael G., Harmon, Elizabeth, Dikow, Torsten, Arias, Carlos F., Hodel, Richard G. J., Spillane, Jennifer, Tsuchiya, Mirian T. N., Villanueva, Luis, White, Alexander E., Bursell, Madeline G., Curry, Tiana, Inema, Christelle, and Geronimo-Anctil, Kayla. 2023. "Let the Records Show: Attribution of Scientific Credit in Natural History Collections." International journal of plant sciences, 184, (5) 392–404. https://doi.org/10.1086/724949.
Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic eraDOI: info:10.1016/j.ympev.2023.107914v. 189
Jin, Ze-Tao, Hodel, Richard G. J., Ma, Dai-Kun, Wang, Hui, Liu, Guang-Ning, Ren, Chen, Ge, Bin-Jie, Fan, Qiang, Jin, Shui-Hu, Xu, Chao, Wu, Jun, and Liu, Bin-Bin. 2023. "Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era." Molecular phylogenetics and evolution, 189. https://doi.org/10.1016/j.ympev.2023.107914.
Phylogenomic analyses support a new infrageneric classification of (Maleae, Rosaceae) using multiple inference methods and extensive taxon samplingDOI: info:10.1002/tax.13083v. 72No. 61285–1302
Liu, Guang-Ning, Ma, Dai-Kun, Zhang, Yu, Hodel, Richard G. J., Xie, Si-Yu, Wang, Hui, Jin, Ze-Tao, Li, Fu-Xing, Jin, Shui-Hu, Zhao, Liang, Xu, Chao, Wei, Yu, and Liu, Bin-Bin. 2023. "Phylogenomic analyses support a new infrageneric classification of Pourthiaea (Maleae, Rosaceae) using multiple inference methods and extensive taxon sampling." Taxon, 72, (6) 1285–1302. https://doi.org/10.1002/tax.13083.
Mitchell, Nora, McAssey, Edward V., and Hodel, Richard G. J. 2023. "Emerging methods in botanical DNA/RNA extraction." Applications in Plant Sciences, 11, (3). https://doi.org/10.1002/aps3.11530.
Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zoneDOI: info:10.1111/jipb.13466v. 65No. 51183–1203
Nie, Ze‐Long, Hodel, Richard, Ma, Zhi‐Yao, Johnson, Gabriel, Ren, Chen, Meng, Ying, Ickert‐Bond, Stefanie M., Liu, Xiu‐Qun, Zimmer, Elizabeth, and Wen, Jun. 2023. "Climate‐influenced boreotropical survival and rampant introgressions explain the thriving of New World grapes in the north temperate zone." Journal of Integrative Plant Biology, 65, (5) 1183–1203. https://doi.org/10.1111/jipb.13466.
Molecular phylogeny and inflorescence evolution of (Rosaceae) based on RAD-seq and genome skimming analysesDOI: info:10.1016/j.pld.2023.03.013v. 45No. 4KEAI Publishing Limited397–408
Su, Na, Hodel, Richard G. J., Wang, Xi, Wang, Jun-ru, Xie, Si-Yu, Gui, Chao-Xia, Zhang, Ling, Chang, Zhao-Yang, Zhao, Liang, Potter, Daniel, and Wen, Jun. 2023. "Molecular phylogeny and inflorescence evolution of Prunus (Rosaceae) based on RAD-seq and genome skimming analyses." Plant Diversity, 45, (4) 397–408. https://doi.org/10.1016/j.pld.2023.03.013.
Collection-based integrative systematics in the new age of informatics and genomicsDOI: info:10.26679/Pleione.17.2.2023.117-131v. 17No. 2117–137
Wen, Jun, Stull, Gregory W., and Hodel, Richard G. J. 2023. "Collection-based integrative systematics in the new age of informatics and genomics." Pleione, 17, (2) 117–137. https://doi.org/10.26679/Pleione.17.2.2023.117-131.
Hybrid enrichment of adaptive variation revealed by genotype-environment associations in montane sedgesDOI: info:10.1111/mec.16502Wiley
Hodel, Richard G. J., Massatti, Rob, and Knowles, L. Lacey. 2022. "Hybrid enrichment of adaptive variation revealed by genotype-environment associations in montane sedges." Molecular ecology, https://doi.org/10.1111/mec.16502.
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern HemisphereDOI: info:10.1111/jipb.13246v. 64No. 5Wiley2020–1043
Liu, Bin-Bin, Ren, Chen, Kwak, Myounghai, Hodel, Richard G. J., Xu, Chao, He, Jian, Zhou, Wen-Bin, Huang, Chien-Hsun, Ma, Hong, Qian, Guan-Ze, Hong, De-Yuan, and Wen, Jun. 2022. "Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere." Journal of Integrative Plant Biology, 64, (5) 2020–1043. https://doi.org/10.1111/jipb.13246.
Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae CladeDOI: info:10.3389/fpls.2021.820997v. 12Frontiers Media SA
Hodel, Richard G. J., Zimmer, Elizabeth A., Liu, Bin-Bin, and Wen, Jun. 2022. "Synthesis of Nuclear and Chloroplast Data Combined With Network Analyses Supports the Polyploid Origin of the Apple Tribe and the Hybrid Origin of the Maleae-Gillenieae Clade." Frontiers in Plant Science, 12. https://doi.org/10.3389/fpls.2021.820997.
Hindcast-validated species distribution models reveal future vulnerabilities of mangroves and salt marsh speciesDOI: info:10.1002/ece3.9252v. 12No. 9Wiley
Hodel, Richard G. J., Soltis, Douglas E., and Soltis, Pamela S. 2022. "Hindcast-validated species distribution models reveal future vulnerabilities of mangroves and salt marsh species." Ecology and Evolution, 12, (9). https://doi.org/10.1002/ece3.9252.
Testing which axes of species differentiation underlie covariance of phylogeographic similarity among montane sedge speciesDOI: info:10.1111/evo.14159v. 75No. 2Wiley349–364
Hodel, Richard G. J., Massatti, Rob, Bishop, Sasha G. D., and Knowles, L. Lacey. 2021. "Testing which axes of species differentiation underlie covariance of phylogeographic similarity among montane sedge species." Evolution, 75, (2) 349–364. https://doi.org/10.1111/evo.14159.
Concordance-Based Approaches for the Inference of Relationships and Molecular Rates with Phylogenomic Data SetsDOI: info:10.1093/sysbio/syab052
Walker, Joseph F., Smith, Stephen A., Hodel, Richard G. J., and Moyroud, Edwige. 2021. "Concordance-Based Approaches for the Inference of Relationships and Molecular Rates with Phylogenomic Data Sets." Systematic Biology, https://doi.org/10.1093/sysbio/syab052.
gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptationDOI: info:10.1111/nph.17658v. 233No. 4Wiley1548–1555
Hu, Haifei, Scheben, Armin, Verpaalen, Brent, Tirnaz, Soodeh, Bayer, Philipp E., Hodel, Richard G. J., Batley, Jacqueline, Soltis, Douglas E., Soltis, Pamela S., and Edwards, David. 2021. "Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation." New Phytologist, 233, (4) 1548–1555. https://doi.org/10.1111/nph.17658.
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in VitaceaeDOI: info:10.1111/jse.12806v. 59No. 5Wiley1124–1138
Liu, Bin‐Bin, Ma, Zhi‐Yao, Ren, Chen, Hodel, Richard G. J., Sun, Miao, Liu, Xiu‐Qun, Liu, Guang‐Ning, Hong, De‐Yuan, Zimmer, Elizabeth A., and Wen, Jun. 2021. "Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae." Journal of Systematics and Evolution, 59, (5) 1124–1138. https://doi.org/10.1111/jse.12806.
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidyDOI: info:10.1016/j.ympev.2021.107118v. 160Academic Press Incorporated Elsevier Science
Wen, Jun, Hodel, Richard G. J., and Zimmer, Elizabeth. 2021. "A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy." Molecular phylogenetics and evolution, 160. https://doi.org/10.1016/j.ympev.2021.107118.
One thousand plant transcriptomes and the phylogenomics of green plantsDOI: info:10.1038/s41586-019-1693-2v. 574No. 7780Nature Publishing Group679–685
Leebens-Mack, James H., Barker, Michael S., Carpenter, Eric J., Deyholos, Michael K., Gitzendanner, Matthew A., Graham, Sean W., Grosse, Ivo, Li, Zheng, Melkonian, Michael, Mirarab, Siavash, Porsch, Martin, Quint, Marcel, Rensing, Stefan A., Soltis, Douglas E., Soltis, Pamela S., Stevenson, Dennis W., Ullrich, Kristian K., Wickett, Norman J., DeGironimo, Lisa, Edger, Patrick P., Jordon-Thaden, Ingrid E., Joya, Steve, Liu, Tao, Melkonian, Barbara, Miles, Nicholas W. et al. 2019. "One thousand plant transcriptomes and the phylogenomics of green plants." Nature, 574, (7780) 679–685. https://doi.org/10.1038/s41586-019-1693-2.