Search Results
Showing 21-40 of about 42 results.
Dietary partitioning promotes the coexistence of planktivorous species on coral reefsDOI: info:10.1111/mec.15090v. 28No. 10Wiley2694–2710
Leray, Matthieu, Alldredge, Alice L., Yang, Joy Y., Meyer, Christopher P., Holbrook, Sally J., Schmitt, Russell J., Knowlton, Nancy, and Brooks, Andrew J. 2019. "Dietary partitioning promotes the coexistence of planktivorous species on coral reefs." Molecular ecology, 28, (10) 2694–2710. https://doi.org/10.1111/mec.15090.
GenBank is a reliable resource for 21st century biodiversity researchDOI: info:10.1073/pnas.1911714116v. 116No. 45National Academy of Sciences of the United States of America22651–22656
Leray, Matthieu, Knowlton, Nancy, Ho, Shian-Lei, Nguyen, Bryan N., and Machida, Ryuji J. 2019. "GenBank is a reliable resource for 21st century biodiversity research." Proceedings of the National Academy of Sciences of the United States of America, 116, (45) 22651–22656. https://doi.org/10.1073/pnas.1911714116.
Recent and old duplications in crustaceans "Internal Transcribed Spacer 1″: structural and phylogenetic implicationsDOI: info:10.1007/s11033-019-04976-4v. 46No. 5Springer Nature5185–5195
Van Wormhoudt, Alain, Adjeroud, Mehdi, Rouzé, Heloise, and Leray, Matthieu. 2019. "Recent and old duplications in crustaceans "Internal Transcribed Spacer 1″: structural and phylogenetic implications." Molecular biology reports, 46, (5) 5185–5195. https://doi.org/10.1007/s11033-019-04976-4.
Host-associated microbiomes drive structure and function of marine ecosystemsDOI: info:10.1371/journal.pbio.3000533v. 17No. 11Public Library of Science1–15
Wilkins, Laetitia G. E., Leray, Matthieu, O'Dea, Aaron, Yuen, Benedict, Peixoto, Raquel S., Pereira, Tiago J., Bik, Holly M., Coil, David A., Duffy, J. Emmett, Herre, Edward Allen, Lessios, Harilaos A., Lucey, Noelle M., Mejia, Luis C., Rasher, Douglas B., Sharp, Koty H., Sogin, Emilia M., Thacker, Robert W., Thurber, Rebecca Vega, Wcislo, William T., Wilbanks, Elizabeth G., and Eisen, Jonathan A. 2019. "Host-associated microbiomes drive structure and function of marine ecosystems." PLoS biology, 17, (11) 1–15. https://doi.org/10.1371/journal.pbio.3000533.
Host-associated microbiomes and their roles in marine ecosystem functionsDOI: info:10.7287/peerj.preprints.27930v11–27
Wilkins, Laetitia G. E., Leray, Matthieu, Yuen, Benedict, Peixoto, Raquel, Pereira, Tiago J., Bik, Holly M., Coil, David A., Duffy, J. Emmett, Herre, Edward Allen, Lessios, Harilaos, Lucey, Noelle, Mejia, Luis C., O'Dea, Aaron, Rasher, Douglas B., Sharp, Koty, Sogin, Emilia M., Thacker, Robert W., Thurber, Rebecca Vega, Wcislo, William T., Wilbanks, Elizabeth G., and Eisen, Jonathan A. 2019. "Host-associated microbiomes and their roles in marine ecosystem functions." PeerJ, 1–27. https://doi.org/10.7287/peerj.preprints.27930v1.
Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organismDOI: info:10.1098/rspb.2018.1307v. 285No. 2884The Royal Society20181307–20181307
d'Auriac, Ines Galtier, Quinn, Robert A., Maughan, Heather, Nothias, Louis-Felix, Little, Mark, Kapono, Clifford A., Cobian, Ana, Reyes, Brandon T., Green, Kevin, Quistad, Steven D., Leray, Matthieu, Smith, Jennifer E., Dorrestein, Pieter C., Rohwer, Forest, Deheyn, Dimitri D., and Hartmann, Aaron C. 2018. "Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism." Proceedings of the Royal Society B: Biological Sciences, 285, (2884) 20181307–20181307. https://doi.org/10.1098/rspb.2018.1307.
MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated databaseDOI: info:10.1093/bioinformatics/bty454v. 34No. 213753–3754
Leray, Matthieu, Ho, Shian-Lei, Lin, I. -J, and Machida, Ryuji J. 2018. "MIDORI server: a webserver for taxonomic assignment of unknown metazoan mitochondrial-encoded sequences using a curated database." Bioinformatics (Oxford, England), 34, (21) 3753–3754. https://doi.org/10.1093/bioinformatics/bty454.
Five new records of marine shrimps (Decapoda: Caridea, Stenopodidea) from the Caribbean coast of PanamaDOI: info:10.11646/zootaxa.4438.1.5v. 4438No. 1MAGNOLIA PRESS128–136
Pachelle, Paulo P. G., Leray, Matthieu, Anker, Arthur, and Lasley, Robert. 2018. "Five new records of marine shrimps (Decapoda: Caridea, Stenopodidea) from the Caribbean coast of Panama." Zootaxa, 4438, (1) 128–136. https://doi.org/10.11646/zootaxa.4438.1.5.
Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majorityDOI: info:10.1038/s41598-018-26332-5v. 8NATURE PUBLISHING GROUP8090–8090
Pearman, J. K., Leray, M., Villalobos, R., Machida, R. J., Berumen, M. L., Knowlton, Nancy, and Carvalho, S. 2018. "Cross-shelf investigation of coral reef cryptic benthic organisms reveals diversity patterns of the hidden majority." Scientific Reports, 8 8090–8090. https://doi.org/10.1038/s41598-018-26332-5.
Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcodingDOI: info:10.7717/peerj.3006v. 5
Leray, Matthieu and Knowlton, Nancy. 2017. "Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding." PeerJ, 5, (e3006). https://doi.org/10.7717/peerj.3006.
Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samplesDOI: info:10.1038/sdata.2017.27v. 4No. 170027Nature Publishing Group
Machida, Ryuji J., Leray, Matthieu, Ho, Shian-Lei, and Knowlton, Nancy. 2017. "Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples." Scientific Data, 4, (170027). https://doi.org/10.1038/sdata.2017.27.
The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French PolynesiaDOI: info:10.1371/journal.pone.0175066v. 12No. 4Public Library of Science
Ransome, Emma, Geller, Jonathan B., Timmers, Molly, Leray, Matthieu, Mahardini, Angka, Sembiring, Andrianus, Collins, Allen Gilbert, and Meyer, Christopher P. 2017. "The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo'orea coral reefs, French Polynesia." PLOS ONE, 12, (4). https://doi.org/10.1371/journal.pone.0175066.
Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications for coral-guild ecologyDOI: info:10.1038/srep44923v. 7No. 44923
Rouzé, H., Leray, Matthieu, Magalon, H., Penin, L., Gélin, P., Knowlton, Nancy, and Fauvelot, C. 2017. "Molecular characterization reveals the complexity of previously overlooked coral-exosymbiont interactions and the implications for coral-guild ecology." Scientific Reports, 7, (44923). https://doi.org/10.1038/srep44923.
Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red SeaDOI: info:10.1139/gen-2015-0208v. 59No. 9724–737
Al-Rshaidat, Mamoon, Snider, Allison, Rosebraugh, Sydney, Devine, Amanda M., Devine, Thomas D., Plaisance, Laetitia, Knowlton, Nancy, and Leray, Matthieu. 2016. "Deep COI sequencing of standardized benthic samples unveils overlooked diversity of Jordanian coral reefs in the northern Red Sea." Genome, 59, (9) 724–737. https://doi.org/10.1139/gen-2015-0208.
Censusing marine eukaryotic diversity in the twenty-first centuryDOI: info:10.1098/rstb.2015.0331v. 371No. 1702Royal Society (Great Britain)
Leray, Matthieu and Knowlton, Nancy. 2016. "Censusing marine eukaryotic diversity in the twenty-first century." Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 371, (1702). https://doi.org/10.1098/rstb.2015.0331.
Exploring Coral Reefs Using the Tools of Molecular GeneticsDOI: info:10.1007/978-94-017-7249-5_6Springer Netherlands117–132
Knowlton, Nancy and Leray, Matthieu. 2015. "Exploring Coral Reefs Using the Tools of Molecular Genetics." In Coral Reefs in the Anthropocene. Birkeland, Charles, editor. 117–132. Springer Netherlands. https://doi.org/10.1007/978-94-017-7249-5_6.
DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversityDOI: info:10.1073/pnas.1424997112v. 112No. 7National Academy of Sciences (U.S.)2076–2081
Leray, Matthieu and Knowlton, Nancy. 2015. "DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity." Proceedings of the National Academy of Sciences of the United States of America, 112, (7) 2076–2081. https://doi.org/10.1073/pnas.1424997112.
Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist dietDOI: info:10.7717/peerj.1047v. 3
Leray, Matthieu, Meyer, Christopher P., and Mills, Suzanne C. 2015. "Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet." PeerJ, 3. https://doi.org/10.7717/peerj.1047.
Effectiveness of Annealing Blocking Primers versus Restriction Enzymes for Characterization of Generalist Diets: Unexpected Prey Revealed in the Gut Contents of Two Coral Reef Fish SpeciesDOI: info:10.1371/journal.pone.0058076v. 8No. 4Public Library of Sciencee58076
Leray, Matthieu, Agudelo, Natalia, Mills, Suzanne C., and Meyer, Christopher P. 2013. "Effectiveness of Annealing Blocking Primers versus Restriction Enzymes for Characterization of Generalist Diets: Unexpected Prey Revealed in the Gut Contents of Two Coral Reef Fish Species." PLoS ONE, 8, (4) e58076. https://doi.org/10.1371/journal.pone.0058076.
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contentsDOI: info:10.1186/1742-9994-10-34v. 10Biomed Central Ltd.34
Leray, Matthieu, Yang, Joy Y., Meyer, Christopher P., Mills, Suzanne C., Agudelo, Natalia, Ranwez, Vincent, Boehm, Joel T., and Machida, Ryuji J. 2013. "A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents." Frontiers in Zoology, 10 34. https://doi.org/10.1186/1742-9994-10-34.