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Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystemsDOI: info:10.1038/s43705-023-00333-6v. 3No. 1127
Weinheimer, Alaina R., Aylward, Frank O., Leray, Matthieu, and Scott, Jarrod J. 2023. "Contrasting drivers of abundant phage and prokaryotic communities revealed in diverse coastal ecosystems." ISME Communications, 3, (1) 127. https://doi.org/10.1038/s43705-023-00333-6.
The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefsDOI: info:10.1038/s42003-022-03679-0v. 5No. 1Nature Portfolio
Clever, Friederike, Sourisse, Jade M., Preziosi, Richard F., Eisen, Jonathan A., Guerra, E. Catalina Rodriguez, Scott, Jarrod J., Wilkins, Laetitia G. E., Altieri, Andrew H., McMillan, W. Owen, and Leray, Matthieu. 2022. "The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs." Communications Biology, 5, (1). https://doi.org/10.1038/s42003-022-03679-0.
Microbial diversity decline and community response are decoupled from increased respiration in warmed tropical forest soilDOI: info:10.25573/DATA.C.5667571.V3
Scott, Jarrod. 2022. [Dataset] Microbial diversity decline and community response are decoupled from increased respiration in warmed tropical forest soil. https://doi.org/10.25573/DATA.C.5667571.V3.
(high-temp) Data for publication figuresDOI: info:10.25573/DATA.20263857.V1Smithsonian Tropical Research Institute
Scott, Jarrod J. 2022. [Dataset] (high-temp) Data for publication figures. Distributed by Smithsonian Tropical Research Institute. https://doi.org/10.25573/DATA.20263857.V1.
(high-temp) Code for publication figuresDOI: info:10.25573/DATA.20261265.V1Smithsonian Tropical Research Institute
Scott, Jarrod J. 2022. [Dataset] (high-temp) Code for publication figures. Distributed by Smithsonian Tropical Research Institute. https://doi.org/10.25573/DATA.20261265.V1.
Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adaptDOI: info:10.1038/s41564-022-01200-1Nature Portfolio
Nottingham, Andrew T., Scott, Jarrod J., Saltonstall, Kristin, Broders, Kirk, Montero-Sanchez, Maria, Püspök, Johann, Bååth, Erland, and Meir, Patrick. 2022. "Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt." Nature Microbiology, https://doi.org/10.1038/s41564-022-01200-1.
Community-led, integrated, reproducible multi-omics with anvi'oDOI: info:10.1038/s41564-020-00834-3v. 6No. 1Nature Research3–6
Eren, A. Murat, Kiefl, Evan, Shaiber, Alon, Veseli, Iva, Miller, Samuel E., Schechter, Matthew S., Fink, Isaac, Pan, Jessica N., Yousef, Mahmoud, Fogarty, Emily C., Trigodet, Florian, Watson, Andrea R., Esen, Ozcan C., Moore, Ryan M., Clayssen, Quentin, Lee, Michael D., Kivenson, Veronika, Graham, Elaina D., Merrill, Bryan D., Karkman, Antti, Blankenberg, Daniel, Eppley, John M., Sjodin, Andreas, Scott, Jarrod J., Vazquez-Campos, Xabier et al. 2021. "Community-led, integrated, reproducible multi-omics with anvi'o." Nature Microbiology, 6, (1) 3–6. https://doi.org/10.1038/s41564-020-00834-3.
(mg) No 6. MAG04 Phylogenomic Analysis (metagenome) OutputDOI: info:10.25573/DATA.14774802.V1The Smithsonian Institution
Scott, Jarrod J. 2021. [Dataset] (mg) No 6. MAG04 Phylogenomic Analysis (metagenome) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.14774802.V1.
The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefsDOI: info:10.5061/DRYAD.M905QFV28Dryad
Clever, Friederike, Sourisse, Jade M., Preziosi, Richard F., Eisen, Jonathan A., Rodriguez-Guerra, E. Catalina, Scott, Jarrod J., Wilkins, Laetitia G. E., Altieri, Andrew H., McMillan, W. Owen, and Leray, Matthieu. 2021. [Dataset] The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs. Distributed by Dryad. https://doi.org/10.5061/DRYAD.M905QFV28.
Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reefDOI: info:10.1038/s41467-021-24777-3v. 12No. 1Nature Research
Johnson, Maggie D., Scott, Jarrod J., Leray, Matthieu, Lucey, Noelle, Bravo, Lucia M. Rodriguez, Wied, William L., and Altieri, Andrew H. 2021. "Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef." Nature Communications, 12, (1). https://doi.org/10.1038/s41467-021-24777-3.
A Genus Definition for Based on a Standard Genome Relatedness IndexDOI: info:10.1128/mBio.02475-19v. 11No. 1American Society for MicrobiologyArticle e02475-19
Barco, R. A., Garrity, G. M., Scott, J. J., Amend, J. P., Nealson, K. H., and Emerson, D. 2020. "A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index." mBio, 11, (1) Article e02475-19. https://doi.org/10.1128/mBio.02475-19.
Scott, Jarrod. 2020. [Dataset] No 2. DADA2 Workflow. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12403865.V1.
(16s) No 1. DADA2 Workflow (16S rRNA) OutputDOI: info:10.25573/DATA.12403865.V3The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (16s) No 1. DADA2 Workflow (16S rRNA) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12403865.V3.
(mg) No 3. Assembly & Annotations (metagenomes) OutputDOI: info:10.25573/DATA.12808601.V3The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (mg) No 3. Assembly & Annotations (metagenomes) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12808601.V3.
Phyloseq workflow for microbial community analysisDOI: info:10.25573/DATA.11828700.V1The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] Phyloseq workflow for microbial community analysis. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.11828700.V1.
(16s) No 4. Differentially Abundant ASVs (16s rRNA) OutputDOI: info:10.25573/DATA.12808427.V1The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (16s) No 4. Differentially Abundant ASVs (16s rRNA) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12808427.V1.
(16s) No 2. Data Preparation (16S rRNA) OutputDOI: info:10.25573/DATA.12403925.V2The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (16s) No 2. Data Preparation (16S rRNA) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12403925.V2.
(mg) No 6. MAG02 Phylogenomic Analysis (metagenome) OutputDOI: info:10.25573/DATA.12809561.V1The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (mg) No 6. MAG02 Phylogenomic Analysis (metagenome) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12809561.V1.
(16s) No 3. Diversity (16s rRNA) OutputDOI: info:10.25573/DATA.12794258.V1The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (16s) No 3. Diversity (16s rRNA) Output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12794258.V1.
(mg) No 4. Assembly & Annotation Summary (metagenomes) outputDOI: info:10.25573/DATA.12808502.V1The Smithsonian Institution
Scott, Jarrod. 2020. [Dataset] (mg) No 4. Assembly & Annotation Summary (metagenomes) output. Distributed by The Smithsonian Institution. https://doi.org/10.25573/DATA.12808502.V1.
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